NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211646_10016584

Scaffold Ga0211646_10016584


Overview

Basic Information
Taxon OID3300020383 Open in IMG/M
Scaffold IDGa0211646_10016584 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3040
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.1008Long. (o)-84.5107Alt. (m)Depth (m)380
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007121Metagenome / Metatranscriptome357Y
F011446Metagenome / Metatranscriptome291Y
F025588Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0211646_100165842F025588GAGGMKTYDKFKKELTEDGMLHGEPGDENPSTQIYYSPNDPEIVKTASNVMTVPKYRLSEDEKGCNHTCSHWRDSSFCAEYHFKCDATYICDSWKNSGI
Ga0211646_100165843F011446AGGAGMEAMVLGWAQTQSWWGIATTVIVIANGITMTLRDKYAENIPILGKIWPILNWLSLNIANNKNEEK
Ga0211646_100165846F007121AGAAGMLKTFLLTIFLLFGVATPAQGDWYIVLQDELQEPTLDKLIDWVPEEVPRTVSFYFDTDEDGKFDIKIAYSLIEAYACKQNCVRRIIDNGDHWILPAPGVNYYVIKKWIVYRYVDDKAGEWRGIDKTQQWIFEYPYNDDWLREKFYPLWPKQRMK
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