NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211646_10059364

Scaffold Ga0211646_10059364


Overview

Basic Information
Taxon OID3300020383 Open in IMG/M
Scaffold IDGa0211646_10059364 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1441
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.1008Long. (o)-84.5107Alt. (m)Depth (m)380
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062152Metagenome / Metatranscriptome131Y
F076483Metagenome118Y
F084713Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211646_100593642F084713GGAGMPKLMIEKIKDKKVYGKDMYKVVKLIDSHRLSLLNTQFDEPSMLRYIQSLPNTYNYEIKNKTGV
Ga0211646_100593644F062152AGGAGGMAGAHYTNDLVNHINKLNQNTRDRGAVGFLTNDPDHWAEYGVYTIGDFQVYLEREHERNMYKNSLGE
Ga0211646_100593645F076483GGAGMQMISLNKLDQIFKEHNMEVDRISKIRNLQTHLNDITLNIPLMRRKVTELNMRWILRNIKVNNSEHINLNKIIKLIKEVI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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