NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211677_10006884

Scaffold Ga0211677_10006884


Overview

Basic Information
Taxon OID3300020385 Open in IMG/M
Scaffold IDGa0211677_10006884 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6686
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (28.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.832Long. (o)-73.0366Alt. (m)Depth (m)35
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045198Metagenome / Metatranscriptome153Y
F045797Metagenome / Metatranscriptome152Y
F067212Metagenome126Y
F098234Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211677_1000688410F045797N/AMRILKTVKEDSCIYLQEDFAGTTISTKWRPYTVGELPKNFGCIEFETEVEGINEWFNYKGYTYVRDNR
Ga0211677_1000688421F045198AGGMKLEAEHIEQIASYMADSLEDHLDIVFWDGIARVLDEFSIDYEDIGDISDEDCEAIVNETRILFSPKNDSL
Ga0211677_1000688424F098234N/AVDNILNKRQMTKEQLENRVKELTVLIEESSNGVKNLVDEQHKLIKDLEDINKPKLSNAQMDEIQHIVESACEVFELDANDCDLELEIDYDNRIQVNNFDWSRCQEDLTQHIMDRLEDFFAVAEDKE
Ga0211677_100068844F067212N/AMQLHCKLCGKDVTMETEFETRAPYRIINNHMCEAKRAKQEAQAKVKALESGFVL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.