NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211677_10014872

Scaffold Ga0211677_10014872


Overview

Basic Information
Taxon OID3300020385 Open in IMG/M
Scaffold IDGa0211677_10014872 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4072
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.832Long. (o)-73.0366Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010201Metagenome / Metatranscriptome307Y
F031710Metagenome / Metatranscriptome182Y
F036740Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0211677_1001487216F036740AGGAGMTIGLVLRHTYQETCEICESIAKFFVKVGSGFNNFFTRVGYARAAAELSRQGYYKEAKKLMIESEEIKADTNKNLKGWV
Ga0211677_100148725F010201N/AMIYKTLEEAIVAAKEMCRVLDTYVKITECETGYELFGTGDFVLEIKE
Ga0211677_100148726F031710GGAGMTAIEHAILATSILAAFFYYGKYLGKKQVVDEIIEHTLETLEKGNYIKVKYHGDSKEKELIPLDTES
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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