NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211677_10017343

Scaffold Ga0211677_10017343


Overview

Basic Information
Taxon OID3300020385 Open in IMG/M
Scaffold IDGa0211677_10017343 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3682
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.832Long. (o)-73.0366Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029763Metagenome / Metatranscriptome187Y
F093842Metagenome / Metatranscriptome106N
F093906Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211677_1001734311F029763N/AMRKLIFIFLMATSFCYTQSNSIPPELYGNWYNLDKELLTIQPNNTFVRKNTEGILAKGKLKIVNNELRVIRADVDDEYTLLFYIGNTSLVVTKPRSQEAWLFYRLGN
Ga0211677_100173433F093906N/AMMMFLNTNGRQGISSFNLNFEFTDEQIKLLKTYGNQITAIYYSEKNNKGKLKIQATEQPI
Ga0211677_100173435F093842N/AMKLTILNFTTGHIHIHNVSSQTEVKKYVDNQSPHKTWMLSNDKEFKIINH
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