NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211678_10070617

Scaffold Ga0211678_10070617


Overview

Basic Information
Taxon OID3300020388 Open in IMG/M
Scaffold IDGa0211678_10070617 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1591
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.8785Long. (o)-73.0369Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020898Metagenome / Metatranscriptome221Y
F069439Metagenome / Metatranscriptome124N
F077379Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0211678_100706172F077379GGAMLTQKALTKKLTATLCTTTNTIFVHKNNKAHLQYTVNSSKIIRNANAQQLQAFNSLQSTLMQKTKNFIVNNALVKQLLNN
Ga0211678_100706173F069439AGTAGMQKIQNTNFTIYTNKNFKNSIFIKTNLQYNLTYMCSSMHKVALCLQAHNLKNATVRILTKRFNNSVQKNLAHATVIRIANA
Ga0211678_100706174F020898GAGGMHNVKLKVNLNKKIANLTNSILNNTNFAMQESAKHSCKSIYKNFKFNSITKSASGNETHFTAQMYNKYYSGRLCMLTFKNNAFVSMYTLD
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