NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211680_10174416

Scaffold Ga0211680_10174416


Overview

Basic Information
Taxon OID3300020389 Open in IMG/M
Scaffold IDGa0211680_10174416 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)840
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-61.9898Long. (o)-49.3613Alt. (m)Depth (m)790
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F001048Metagenome / Metatranscriptome793Y
F051476Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0211680_101744162F000615GAGVRRNQNNIVSGLERPVNIMCRIRCFYECSDGKMGWAEMVLSYDDDIAGFVKHWGTGGRMVTTEYIDLV
Ga0211680_101744163F051476GAGGMTYWKVKLIIKEKLHKSELFESLAKARLWSMREAKLVVADRLFNTTDIVAEITSHEFA
Ga0211680_101744164F001048GAGMKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIESLVRKRVRWELGSEGMAVWDACGYKDIPTLAKAYRIS
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