NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211666_10020928

Scaffold Ga0211666_10020928


Overview

Basic Information
Taxon OID3300020392 Open in IMG/M
Scaffold IDGa0211666_10020928 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3067
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042580Metagenome158Y
F047319Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0211666_100209287F042580N/AMARPKLPEIEKVQKRVRKRYPGSICVQDSYGRYYIQWNQENLNDIFLLDNTDTELLAWEQASITAKHEQHINRTHPLKKLISDEQKNQNKERITRRIRKYE
Ga0211666_100209288F047319N/AMYNQGETVIVTEYLDKKKKDEKHSVGVIMKSFVHKKQTFYDVLLERRTALSFLNTARSSKQAFINKDLTTKLVETGDIESTIPFKSMLDNEQLPIIIA

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