NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211666_10159871

Scaffold Ga0211666_10159871


Overview

Basic Information
Taxon OID3300020392 Open in IMG/M
Scaffold IDGa0211666_10159871 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)878
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042580Metagenome158Y
F047319Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0211666_101598711F047319N/AYNQGETVIVTEKISKTEEKHSVGVIMKPFIHKKQTFYDVLLERRTALSYLNTARSSKQAFINKDLTKKLVETGDIESTIPFKAMLDNEQLPIIIA
Ga0211666_101598712F042580N/AMARPKLPEIEKLQKRVRKRYPGSVCMQDSIGQYYIEWNQENLNDTFLLENTDTELLAWEQASITAKHEQHINRTHPMKKLISEEQKNQNKERITRRIRKYD

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