NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211618_10016209

Scaffold Ga0211618_10016209


Overview

Basic Information
Taxon OID3300020393 Open in IMG/M
Scaffold IDGa0211618_10016209 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3360
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_045
CoordinatesLat. (o)0.0033Long. (o)71.6428Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021526Metagenome218Y
F026851Metagenome196Y
F081221Metagenome114N
F087026Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0211618_100162091F087026AGGAGGMVRGKWKAGDLVQVESTQKTGWGDECHSHLVLVLGRYKQKHRRTSPKPHFPLSAYLAENSSKEDVIYEVLRDDGKYLKLGLKDYASPGVRLTNRL
Ga0211618_100162092F081221AGGAGGMLAALYNIAILVTGFAAVICASLTAVALINLLSSSMLTYRDDKLLLAWSLPSGLFFAGLLMVMLGWT
Ga0211618_100162095F026851AGGAGMTPKEAQRFTKLLHNTDDMTPLEKAEVGRLKTAYLSAVIQETEAYVAAKEAYEDAKKHLDVRDPGEREVLMTLLKSMRDGEKNVLIIASELETHFGISA
Ga0211618_100162097F021526GGAGMRYFSIDYRSPPSGMGQIIDTTKPKKKGNQYNYILVTYSGCGLEQDPSYVLTAHFSSQEADKQGWCGPILEDIINYLRSQGVTHVQDGELAYEYEGGNENDFNGLFTLDRWEEIMMSYL
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