NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211497_10012304

Scaffold Ga0211497_10012304


Overview

Basic Information
Taxon OID3300020394 Open in IMG/M
Scaffold IDGa0211497_10012304 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4675
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_058
CoordinatesLat. (o)-17.5656Long. (o)42.1988Alt. (m)Depth (m)66
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079507Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0211497_100123043F079507N/AMALGTWSNPYGAQGGGLPSTGDISMFSSKPFGGGNMFGAIAGGLFSLGGSIIGARSQAAAAQAQMDASADQLKNNIMMNREARKGNLAKFIGQNVADYGYGADLDFQRQKDASIFDSTRKRDLERGANIQDYRAMLGEQMSPTAIQQRQRARRGRILEETARRRAQTEGMFGPISSSYG

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