Scaffold Ga0211497_10162941

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211497_10162941

Scaffold Ga0211497_10162941

Overview

Basic Information
Taxon OID	3300020394 Open in IMG/M
Scaffold ID	Ga0211497_10162941 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	866
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_058
Coordinates	Lat. (^o)	-17.5656	Long. (^o)	42.1988	Alt. (m)		Depth (m)	66
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096285	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211497_101629412	F096285	GGA	MNWLKTAAIVIWIRAHSDLLFRGLISLGIFFILNSIYRKYEAVLLVTNPEKLFIPLYIYTFTILALVIWTLSALRWISGMAVAKKKVAAKESFTNKSDEYKKIADVKNYPKLKTKKDSIIES

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.