NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211705_10013341

Scaffold Ga0211705_10013341


Overview

Basic Information
Taxon OID3300020395 Open in IMG/M
Scaffold IDGa0211705_10013341 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3058
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7006Long. (o)-17.9915Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002444Metagenome / Metatranscriptome558Y
F006043Metagenome / Metatranscriptome383Y

Sequences

Protein IDFamilyRBSSequence
Ga0211705_100133414F002444GAGMLKEGGSLGIDTIGNKPIDEDIDLLPDTTTGISLSLRLTYDALSVTSVTATSPRAIVLGD
Ga0211705_100133416F006043N/APDAATYSTAINQLGGIGDEEKQIAEVSRYIVGKVVLNSTTGTSTPKVKSVQFRALARPELVVAQVPINISDRVERPGRKPLKVKGLGETLYNSLRSKEGDSVTLELFEPSEVIKGVVEQISYPIQTNEAVGSDTHYAIITVRGTRQGTIEEVTSIHTPGIAAWGIMRFGA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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