NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211687_10060486

Scaffold Ga0211687_10060486


Overview

Basic Information
Taxon OID3300020396 Open in IMG/M
Scaffold IDGa0211687_10060486 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1674
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1208Long. (o)-57.8265Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017045Metagenome / Metatranscriptome243Y
F020445Metagenome / Metatranscriptome224N
F072753Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0211687_100604862F017045GGAMAAKSNSLLRRYDKLNKLHREIMQKPKSNSRQCVHSLQAFKKYIKTFRQIVVVENGDATFKYTQL
Ga0211687_100604864F072753AGGAMKSKNNGHIYLSKIKYDVLKYISTFIKQHRYSPTYKEIAVKFKFSRARAGAIVAELFKLNLISKGGSAHRKIRLTDTQTDSIPTLLYNKEYSAMDLRR
Ga0211687_100604866F020445AGGAMADNNYDNSGAMWKRQPRDTDKPGGKYPQYQGNIQIGGVKKNLAAWLNVEKTKDTQPDISLKISDIVAKEDAPF
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