NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211583_10060111

Scaffold Ga0211583_10060111


Overview

Basic Information
Taxon OID3300020397 Open in IMG/M
Scaffold IDGa0211583_10060111 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1470
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)6.0124Long. (o)73.8985Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F009812Metagenome312Y

Sequences

Protein IDFamilyRBSSequence
Ga0211583_100601111F000720N/AIEMTLIKENKVRREIPNRMMSATFALPIDERRVVGILDYVASDTGVTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNVIGQMANYLHKNMEDIILGKQPDKKQRMLSTDPYAMKE
Ga0211583_100601114F009812GAGMDEFEIDWIPEDTGAPYEAEDVFLDIPAHTIDKICKKKFGHTNWARMGQMAPEELVGNPCEFDYENGVIFFKNAHMV
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