NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211637_10171941

Scaffold Ga0211637_10171941


Overview

Basic Information
Taxon OID3300020398 Open in IMG/M
Scaffold IDGa0211637_10171941 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000949 (ERX555993-ERR599072)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_112
CoordinatesLat. (o)-23.1719Long. (o)-129.6713Alt. (m)Depth (m)696
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080505Metagenome115Y
F082824Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0211637_101719411F080505N/ALKKLEGGKKSISAFFSMMSRYLESGIATSGGIVAEMDADVLISAKDDIMSMVDKTGRRWVEVSWFENANITGPGFGKFEKDLNTLIKDLVVKHLTPILGKNEVKREHEYELWSNMKIHLKGDGQKLRLIIKDYFDGMEKVIKKNKEVMSGIFYGYARSKRMTDNAWDEQVVNNIKVKKVHVIKPHPSKDVWGEDEIKQHITDIKNWPVQSWDVAIDLEIYTRAVVKKEIG
Ga0211637_101719412F082824AGGAMKKKISERVLTTRQAVTQMNHYWKDLDHMASDDMKKKNMDRRFGIKNIKLDRYGNIIS
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