NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211623_10294573

Scaffold Ga0211623_10294573


Overview

Basic Information
Taxon OID3300020399 Open in IMG/M
Scaffold IDGa0211623_10294573 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.056Long. (o)4.6606Alt. (m)Depth (m)700
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000563Metagenome1022Y
F024674Metagenome205N

Sequences

Protein IDFamilyRBSSequence
Ga0211623_102945731F024674N/AMSIYDTVDEQLMELELNDKVFKKDPLKKNLNSTIDMFNSKYLIELKYRTHSIDKIKLWGGATIQRDKYQALMRECKDKIPAYINKFPCGTYYGWNLKKIKEPSWYEKMYNKSTVEDKGLKPKIVGDLQFDEGKKLI
Ga0211623_102945732F000563GGAMKYKFQVTEDGKKEEKESMSFKKLLKSLVTPNPKWTGFMSYENKKGRHVVHSILNG

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