NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211636_10018489

Scaffold Ga0211636_10018489


Overview

Basic Information
Taxon OID3300020400 Open in IMG/M
Scaffold IDGa0211636_10018489 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3218
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9721Long. (o)-139.2742Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006221Metagenome / Metatranscriptome378Y
F031509Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0211636_100184892F006221N/AMKKHDYITVLGTNNVQITLDKLAKYGPIISTSNHEHDLKHVDYIWTRYEKDLLWYLQQRPSPVNCVTTPELYKKYVFYDQVHSFPPISPQFNLTLDVNTDDQTLALLAALGLTEKRILLVGYAISNPVVLKDLRSIIMLHPDMKFYFLCNPPKTKQLDYCSNAECVLFKDMETLK
Ga0211636_100184893F031509GGAGMQDSEWTINYIVKVFWPPHCRNRDHKTLGDRADIVNEMNAMRTKIENFLKASCSGKYKVSDEYNMQGFNVGLESGPDVYNFILEQATIGYELEREIGRYNIFSDKFIRHRILYTEKGVVV
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