NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211636_10025063

Scaffold Ga0211636_10025063


Overview

Basic Information
Taxon OID3300020400 Open in IMG/M
Scaffold IDGa0211636_10025063 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2682
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9721Long. (o)-139.2742Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019821Metagenome227N
F021526Metagenome218Y
F026851Metagenome196Y
F081221Metagenome114N
F105104Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211636_100250633F019821AGGAGMTITNKTTLQELIDLGLFKAADIEKLNNKITRGADRAARKALVEGTMSAIKALVASEAHDGNRYWSVKPAAHSLGFMTFIEADRGTILKALTKLTEEGFLTKVGLKKVGGKLTELDKTQVNAFQLRYIVTPVEEADAAADEAAE
Ga0211636_100250634F021526GGAGMRYFSIDYRSPPSGMGQIIDTTKPEKIGERYNYILITYSGCGPVYDPTYNLTKHFTSKEAEQEGWAGPVLEEIIRFLRAQKVTHVYDGELAYEYEGGNENDFEGLFTLDRWEEIMMDYL
Ga0211636_100250635F026851AGGAMTKQQLQQLLKDPVNMTPLEQAEIGRMKQAYFSAVAQETEAYIAAKEAYDEAKEFLDVKDPDEREVLMTLLKSMRDSERNMTVISNELEVHFGISA
Ga0211636_100250636F105104AGGAGMLHHIYYINPEGADYYMIVPFDEIKGTVAFLESLDYEVVAYWPIEEVA
Ga0211636_100250637F081221AGGAGGMLAALYNIAILVTGFAAVICASLTAVALINLFSSSMLTYRDDKLLLAWSLPSGLFFAGLLMVMLGWT
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