NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211617_10000322

Scaffold Ga0211617_10000322


Overview

Basic Information
Taxon OID3300020401 Open in IMG/M
Scaffold IDGa0211617_10000322 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26798
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (13.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024093Metagenome / Metatranscriptome207Y
F035957Metagenome / Metatranscriptome171Y
F066695Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0211617_1000032229F035957N/AMSKYFDDLTLEEMFECHDHTYMMSDDNRAYENGRRQRDILEDKVKSQGGWTKELVDLYNKYAPEGMFQKDWEWMQKYNK
Ga0211617_1000032232F024093N/AMNIVAEEIATDIIKEIKEQSDWQVGQFLPKDAESPIINDTHSYLMRLVARQIANKLDVTTNKYYDE
Ga0211617_1000032235F066695N/AMAELLTDDIINVALSDDGIMEEPDANWLLEYIDTEYGGKLDNTTSWCDDKHKLKIYSESTADGYEIYFCTHEEKPYVSNDGYYYEDHSEWSDQAISELTSGSDVWIAPEVWEDMEYEFNNELESWWPDVYEEKFNNKKDELLDSGDYYEDEE
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