NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211617_10001716

Scaffold Ga0211617_10001716


Overview

Basic Information
Taxon OID3300020401 Open in IMG/M
Scaffold IDGa0211617_10001716 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10816
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002444Metagenome / Metatranscriptome558Y
F003196Metagenome / Metatranscriptome501Y
F003423Metagenome / Metatranscriptome487Y
F062777Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0211617_1000171613F003196GAGGMQLQKEVLIDISDNATTSSAAQCDGLLLSGIVFPAAMTGSAVTFDFSFDGTNFVDVVETDGTEVTYTVTAGDVVRVDPSGWAFASTGFLRIVSDSSEAADRTINLIFKQS
Ga0211617_1000171615F003423GGAGGMEEFDAPQEHGVKQMRETIDRKDEAIKKLEAELASFKDKEINNVFGKLGLSTDKGFGKALKQVYDGPVDLESISKFAKDEYGFEATGQVQEVTQPEPEPVVQDDARARVAALDANSNSEVPLNANEELVAALRNASVKDSLRAKLNFMEQDKTNK
Ga0211617_100017163F062777N/AMDFLTGFVLGYLCKEIVAYLKKLATGPIPGDWDKEWDWMSPIQEDDLP
Ga0211617_100017169F002444GAGMLKEGGSLGIDTIGNKPIDEDIDLLPDTGAGISLALRISYDGLSVTSVTATTVRAIVLGD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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