NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211617_10003140

Scaffold Ga0211617_10003140


Overview

Basic Information
Taxon OID3300020401 Open in IMG/M
Scaffold IDGa0211617_10003140 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7856
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014085Metagenome / Metatranscriptome266Y
F022423Metagenome / Metatranscriptome214Y
F040134Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0211617_1000314011F014085N/AMDNLSEIREHALKRAGGSCEWAYCNDNKWLELAHIQGIGMGGNKKRKFDLNNVAILCKHHHDIYDGRQRVGTSVAYRDLLKGFLKRESQL
Ga0211617_100031403F040134N/AMTHINVKSKWTLTSIEYSGLGDKPYFILSNDQGDVKLVPITRGVHNLKDLLDLEEE
Ga0211617_100031405F022423AGAAGMQDLNFITQTVAEMTSRVESTETVNKIIGTANQYAQVKKFPASKELWSDEQVGAYLDMIERMLDLPTEFTQGEFEAMSIQEKLSAAGIETTDKTDGPQNPEGIVGGVVTQMAEQNKYRDDLKCPYCQQMVYDNRNSKRSDKSPDFTCSTNDPTVCGGHTGKWRKSWWIDNSDIPEEWGI
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