NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211617_10003882

Scaffold Ga0211617_10003882


Overview

Basic Information
Taxon OID3300020401 Open in IMG/M
Scaffold IDGa0211617_10003882 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7027
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097158Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211617_100038823F097158N/AMDYLVGFIFGFIVKEIYRLLQYLSTTEMPIIDYDWDQEWDWITRPEDLP

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