NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211617_10248811

Scaffold Ga0211617_10248811


Overview

Basic Information
Taxon OID3300020401 Open in IMG/M
Scaffold IDGa0211617_10248811 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)738
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033459Metagenome177Y
F077386Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0211617_102488111F033459N/AMNISRQQLDKLVVGTNDVSYVPPDTSPTGTAVLNGPV
Ga0211617_102488112F077386N/ANKMSKAPKDKQNLERDVHLRYCTQSGQSSIHGETLYEVQTQEAQSFSFHSGTGQGSTGKGPGTGKAVLYTPGCSMEILGEGLKVRSPGDISQLPAKIIKCKKGDILFDVENGDITFRARNINFEAVGGGQDGQFLAKATRVATIDAPDIRLQGEKILIKSDNQINIISKGFLELKSGFTLSASFADDNFGTMSKVLKAATTITPPTL
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