NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211617_10275849

Scaffold Ga0211617_10275849


Overview

Basic Information
Taxon OID3300020401 Open in IMG/M
Scaffold IDGa0211617_10275849 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009691Metagenome / Metatranscriptome314Y
F018383Metagenome / Metatranscriptome235Y
F023367Metagenome / Metatranscriptome210N

Sequences

Protein IDFamilyRBSSequence
Ga0211617_102758491F023367GGAGGMKKFVFTEKFISYADVEIYAENEEKARLQFQNGNYQYYDVSDFTDGHELIEVKEVTD
Ga0211617_102758492F018383GAGGMEKITFNNEQLEFLKFIVQDFEYNDDHERYMIEQIENKIYQAQENQMLKVIGGL
Ga0211617_102758493F009691AGGAGMKSTLNSKDYVTFARRFVKETVETMDIEELRSLVTNQIHEEIQEGENEFGQSGAFDEMIAWNEDVFLSVAEDFELEFEGV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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