NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211499_10066061

Scaffold Ga0211499_10066061


Overview

Basic Information
Taxon OID3300020402 Open in IMG/M
Scaffold IDGa0211499_10066061 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000609 (ERX555971-ERR599057)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1381
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_056
CoordinatesLat. (o)-15.331Long. (o)43.2908Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047921Metagenome149Y
F057000Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0211499_100660611F047921GAGMNKLEEQLDFLNHQAEKYIARPRRGAIGGSAERGYSVCSCTSENFINYSSNQWLTRATFVSTWLIGFNAAEINKQFFEKYNFLTLSSHAIIDNCCPSWIISPPFSKKTFYNYVLMWDCFEEALAVYKEECSNHKEMYRGMEKSIKRMEDEDARLSLTAALDYVFEDDLEYLKTSYPIFSRKKAH
Ga0211499_100660613F057000AGGMIKKLNKNRVRRDRPLTSFYLDKDTSDYWKINIQLWDIEFELKELREQIWIHALRLRFAIANTKSFEIKTQLKFKEKIVLEHIASIEKLRKENKDAWRKNLENEYGENAIWF
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