NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211499_10098356

Scaffold Ga0211499_10098356


Overview

Basic Information
Taxon OID3300020402 Open in IMG/M
Scaffold IDGa0211499_10098356 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000609 (ERX555971-ERR599057)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1087
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_056
CoordinatesLat. (o)-15.331Long. (o)43.2908Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042384Metagenome158Y
F049043Metagenome147Y
F056677Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0211499_100983561F056677AGGAGMDIYRNQERELKLAKKPLIVLEDELWQINQLSRLRKDLRNRKKRLEKVIAVKRLALQAVQEKIEREVANEKK
Ga0211499_100983562F049043GAGGMKRNNIEEMHKQMFLLVNLLKKDGHDPLAIAGCMLAGAVQIYQTELGEDTTFQLLDQIANGGDDDFDIDESVDKETIH
Ga0211499_100983563F042384AGGAGMGLMPVYYTTTKLSGKRKSSVRNQRLNKEHEKWLRSMGIDKPFRPKSEPLKISAKKTERYQSVGNGIGNGFVKTTSAISGDYIVGQAYNKGNLVVLSKEDAKDESTGKRR
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