NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211532_10000027

Scaffold Ga0211532_10000027


Overview

Basic Information
Taxon OID3300020403 Open in IMG/M
Scaffold IDGa0211532_10000027 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79212
Total Scaffold Genes125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (34.40%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.5679Long. (o)66.4581Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002876Metagenome / Metatranscriptome524Y
F019256Metagenome / Metatranscriptome231Y
F040584Metagenome161Y
F089561Metagenome / Metatranscriptome109Y
F098264Metagenome / Metatranscriptome104Y
F106117Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211532_10000027108F040584GGAMSKNIKGGGYVIGAPKKTNQGQGKHSRPNHGRKKLRGQGK
Ga0211532_1000002715F019256N/AMANDPGDSGSNTQDAAVDLETFQQLLDKLEGSKKRQQRQKSVEGRRDIYSQGLASMMSNF
Ga0211532_1000002752F089561AGGAMCPAILFVSYLITTYLKGIPHAITPNVDAKVFELIPITKDSQISKAFCSPTKTGAMNILNWINKNDSNLASKELSVQPEAKFFK
Ga0211532_1000002756F106117N/AMALSFESSPEEEFWSVRMNRHIEDCSSVSELKQIATLLVKLAATRQCVIKGLVKESLDRMESEFIIGS
Ga0211532_1000002761F098264AGGAGMNSKNYEEHIYYILDHFTKGGTPLPALIGNKLEWQVTTLVAGLLANEHVSSSLDAEDLVDAAINYVNIIQSRLGYYQDSKVNNLEHLLDK
Ga0211532_1000002787F002876AGGMACKQSELVSAINSFGAARSTGDANLVAFSGRLIGELLETLTFEPESDPTEEGETSDDQS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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