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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020403 Open in IMG/M |
| Scaffold ID | Ga0211532_10050953 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1947 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_039 | |||||||
| Coordinates | Lat. (o) | 18.5679 | Long. (o) | 66.4581 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F044796 | Metagenome / Metatranscriptome | 154 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211532_100509531 | F044796 | AGGA | MTYQSRNPIVLEAIEKAWENSKTQKQAAEKYLNMLRNDKELRDAATARYLQRIASEDVSGRSRANRISFKRQAEKISKQVLLKKGEHSTPNVSLKNTAVNYAKNIFDYFALPDLGIALGDATKADLEHVVKREHGKMNTHKRNHKFLSAILEKMPEGKIVRDVWKIEDVEAIHTDVMVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |