NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211532_10099511

Scaffold Ga0211532_10099511


Overview

Basic Information
Taxon OID3300020403 Open in IMG/M
Scaffold IDGa0211532_10099511 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1248
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.5679Long. (o)66.4581Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016882Metagenome / Metatranscriptome244Y
F057678Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0211532_100995112F057678N/AMVEYEVNDKVVFRFNNVNELAVVTNVRRHKNTVTGYDIRSEKGSGYVLVQVDTNLSTRQLNKRVEYPLIDSKLTAAWNDSDSETNLFAKENVGHTRQNFPKDMTLFLDGEGGGGVQHFERHNDLIFPTQGPRSF
Ga0211532_100995113F016882N/AMAYYVSRVKIATDTPKGVKWLNERYLVNAVSVGHAEQLVHDDFKDSGIQFEVKSVSASPICKVIGTTKKI
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