NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10002310

Scaffold Ga0211659_10002310


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10002310 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10262
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003637Metagenome / Metatranscriptome476Y
F050424Metagenome145N
F072428Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_1000231014F003637AGGAGMAKVIAEKVQEQAQSSVKMVEIKHTRTMQDASGKDVEVVDYTDVKSVDEAISQCEAHKANLEAQLSECEADLADYIAIRDAE
Ga0211659_100023102F050424GAGGMAIEFENIYKDRVIDTIQKLLKQNLSSIPIVFDEHRGQESILITPESDNFLDFASNVHIREFTTSINYQLRKGGEYTKDNQLNRLTMIAEIIKRILFDNRNFESGNITNWYGGQVSSVEYTRDEDDETISNVIVTFQCNTNEVIS
Ga0211659_100023108F072428AGGGGGMDLAETIKRMKELSAMLQAKTISDREKEFYLPELHRLIESLEVPQLIGEFKNEYIS

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