NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10010620

Scaffold Ga0211659_10010620


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10010620 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4625
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046081Metagenome / Metatranscriptome152Y
F090174Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211659_1001062011F090174N/AKMYAGATVSLMGYAEASYMQIGDKDGITDSSNNQQGYSLGTSLYRFDIPLVLGVEMWDDKNTGTYTKENRMDYGAMYGLTDEVVLGFHRVENDDIGTNGDYLSAVYTQGPIEIGAYYHMTESQNLGTGVITENDNSVKGTFKYKF
Ga0211659_100106207F046081GAGGMFWIRAEKDFIQSKEIEQESKLQFTGSKDLSEGSCAYVNNLTDERVVIHWHDKTDTTKLVQTAELERPMIINTAHPVTLKNLGDKSAVVDYVDLNTVIEHYGYEF
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Institute for Fundamental Biomedical Research
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