NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10035156

Scaffold Ga0211659_10035156


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10035156 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2412
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003920Metagenome / Metatranscriptome462Y
F004715Metagenome / Metatranscriptome427Y
F018084Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_100351564F004715AGGAMIPYTADEMKWISKGKKKRRSNQTADGQPPREEDDRLWQRCWGIRTTIEVDGREYTVPIQ
Ga0211659_100351565F018084GGAMIKTALIILAIFIVPGVVMGVISSYRAGQKPHEDLYLRFKKFTHRKK
Ga0211659_100351567F003920N/AIPLYSLNNCMLVRTIILYAVMTVCALAFHENTFAVFELKEELQIRYMNMWELLQQLEYVDPHQREVVYAEIQHIREEIQRIIDLLIQHDQSQHQ
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Institute for Fundamental Biomedical Research
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