NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10050186

Scaffold Ga0211659_10050186


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10050186 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1978
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000999Metagenome809Y
F008052Metagenome / Metatranscriptome340Y
F030780Metagenome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_100501861F008052N/AKQFKTEATDKAVDKLSKKIGADTIIKKFAEAEKMLEEARATALTFFNKKKPKDQELNYNFRDQGSRYADKLTLSDCQDQLREWASELAEREIEKRPEGAKLKHLKELKLKALDVVMESGTPDTLAIALDSVSKKIGLRWNQDLQALPNFKQAS
Ga0211659_100501862F000999AGGMGYSMLEYPITKERITMNIEDLIKEAKQIEEKSEFIVSWFAKKYKKTIRRVGHLNKDGCRVWEDYKGNKLMCFWDPVINRYTTCINPVITYKKGLN
Ga0211659_100501863F030780N/AMEGYVMTDKVKQVIWVFDIEENKKKRINLQTLLNRTNHSFRHENIKYFALEKDRDEFAKECRA
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