NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10059761

Scaffold Ga0211659_10059761


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10059761 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1794
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022458Metagenome / Metatranscriptome214Y
F030151Metagenome / Metatranscriptome186Y
F068870Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_100597611F068870N/AMDPLTSKPSCIEDLKELVNNLTDRDVSIKNHLSCIKSVVEDKKIKCDTAKIKKIKQILKN
Ga0211659_100597614F022458N/AMLDDWLNQDPDDGFNPNDHGIEMNEIAKLYAMEDMREDQETWAREQANKFYHDFITLDINDATFAVNSLIKTKVLNINQVKTMLDNMIKIFERDEEYERCHVCNQIKKGLK
Ga0211659_100597615F030151AGGMLYFKATNVEELEAEAQKRAHEVSVFTTKAIIEALEKDADKVVVGVLTTLDLDLSVEKSGYLDALETNLVRCEEAEEFELCKESIKWITKLRD
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