NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10067403

Scaffold Ga0211659_10067403


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10067403 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1677
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED234(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041166Metagenome160Y
F098268Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0211659_100674031F098268N/AMPWHEKFRPEVNLKDFSILYDYNYASMWTRWRRGYELFMYTNQALVGLNYTFRYAMNGQAGSGGTEIPGLMYMYPSTEQDMGMRMVVIRPRDSINLLDLGLSIKSVFNFDLLNKVIGVELSSNFGPPVSDMTGELVSDRFQADGTPKTTYGNYTVVAVGTKAGGPQVPTGAADLDTLFLSVSEEKSFTTIEDKSFASPAFGNPQVGEFLSTAMRFGCNCPDYLNREDFNLYKYAQKKTYPYTGTQDLKPGTYDAGTNTFDGERPVDTRDFPGFVRDFGFLYTKNLFLGPATGGDGPGTSYSDPNLLFFQPKFCKHIYASWWDMQNRFENYKYLDAFLQQPTDEPMDGRYREYFEIQLGKQTRFLQTARSLNWWEAYSPARDTVPDHVLYSDMNPTMVKVLNFDTLASGVSVPLVPSGFVM
Ga0211659_100674032F041166N/AAPATAASILLNKFTVGLSGSTEGLIQRVELPKTIAPTPQVGDTALTRPIELGGAEALYLEKGYVLGVGYLGDSALAVSGGLSPSGVSFWAQGGFY
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Institute for Fundamental Biomedical Research
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