NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10086613

Scaffold Ga0211659_10086613


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10086613 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1453
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006867Metagenome / Metatranscriptome363Y
F021674Metagenome218Y
F069451Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0211659_100866133F006867AGGAGMLQDKELKELHKSIQSRCRIQPGMLVKTNAVRPLPSEPSKLALVVKVSPACSFDRDYEGAEEHIFYVCEPFDGTPSFVDYVCNMEQVS
Ga0211659_100866135F069451GGAGGVKPGDLVRIRKSAIDAYSTLWFIDLAEAKAPLLLMEKLNKQHWKVMKPDGTDCFISEHKLTRRMW
Ga0211659_100866136F021674AGGAGGMERETYNSRLKTNPEDIPVGSLLRIKKHCRKNNIVKQNGELAILVERPHGTYISHDVLFPSGRRTIFIPMNWEVVSYAR
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