NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10118317

Scaffold Ga0211659_10118317


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10118317 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1213
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F015105Metagenome / Metatranscriptome257Y
F040144Metagenome162Y
F049033Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_101183172F015105AGGMNLEQRKANLIYEIASLINDDPLSAPVLIEELVDIMFDEQIDHIEDVIVNQFGVEVYGEETV
Ga0211659_101183173F049033AGGAGMRTKNKVALDSLIDNIKHTFYYVGAKGDDVDQFEIDTLHKLVDEFASQVTISDSQGQ
Ga0211659_101183174F001479AGGAGMPKEMLFLCDVYTKWLKENQLPHLCASEILYGKDTMNKLTINQTYWLENFISTWDIIAQN
Ga0211659_101183176F040144AGGAGMTTQLHEFYITRKCTKMEYFTVKAESLEEAKYEAEHGYDYYNFDWEEFDYETVEIKEQEIPEQQLTLSGLLV
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