NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10204438

Scaffold Ga0211659_10204438


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10204438 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)885
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006217Metagenome378Y
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_102044381F015102N/AMQEETEDGENPNTPFDDVTHWVGNLPSKDTDSDERTNKRNTRGKTKSNFLRKKLGLEEK
Ga0211659_102044382F027536AGGAGGMKVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDEEARLHEQEQKLYEQDKQEGVEWVPNF
Ga0211659_102044384F006217N/ALLLSVIEEPNQFHKYCMEKHEHWTGRAACVQELRHAQRKLEVEELRQFLKENPHYKYPGMALPNGKIKPLDVCWGSDKTYYIGSDKVKKGKC
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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