NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10254300

Scaffold Ga0211659_10254300


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10254300 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)779
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032291Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_102543001F032291GGCGGMAPVDESSDSPAGSEGETDHEVTVPPLSEGETVVMAVSLVSVNEFGLYVSEDGATSLTTMVTVAVAVPPVLEAVTV
Ga0211659_102543002F032291AGGTGGVTAVGVPLMAPVDESNERPAGRDGETDQVVMAPPLVVGVTVVMAVPLVKENESGLYVIEDGAMSLTSMVTVAVVLPPVLPAVTV
Ga0211659_102543003F032291N/ALMAPVDESNVSPAGRVGETDQVVIAPPLAVGVTVVIAVPLVKVNASGLYVSEEGAMSSTTMVTSSVVLPPVLLAVMV
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