Scaffold Ga0211496_10001607

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211496_10001607

Scaffold Ga0211496_10001607

Overview

Basic Information
Taxon OID	3300020405 Open in IMG/M
Scaffold ID	Ga0211496_10001607 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8581
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_062
Coordinates	Lat. (^o)	-22.3407	Long. (^o)	40.3444	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045852	Metagenome	152	Y
F092351	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211496_100016078	F092351	N/A	MKFQIDDFINFHVLFMTICILIAYEYIMNGSNIIIEKKIKDK
Ga0211496_100016079	F045852	N/A	MFYIIALILFLCIFSYTLKEGYLNYQDLSENISEKNCPQMHADNYKKILMNPQMVQPYGYTKNDLFHMTRFMKTDVPLPTDPDLFYHI

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