NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211496_10019922

Scaffold Ga0211496_10019922


Overview

Basic Information
Taxon OID3300020405 Open in IMG/M
Scaffold IDGa0211496_10019922 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2378
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_062
CoordinatesLat. (o)-22.3407Long. (o)40.3444Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007756Metagenome / Metatranscriptome345Y
F009691Metagenome / Metatranscriptome314Y
F013094Metagenome / Metatranscriptome274Y
F018383Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0211496_100199223F007756N/AMKQLNTLKRYYVNVKFEKYGTYTIEARSKEHALEIYNDGDYGWDDYTEDFGEFNEVVEDVEEELFADTQLTLSGVLS
Ga0211496_100199224F009691AGGAGMKSTLNSKDYVTFARRFVKETVDTMDIRDLKSIVTDHIHEEIQEGENEFGQSGAFDEMISWNEDVFLSVAEDFDLEFEGV
Ga0211496_100199225F018383GAGGMEKITINNEQLEFLKFIVQDFEYNDDHEKYMIDQIENKIYQAQENQMLRVIGGLN
Ga0211496_100199226F013094GGAGGMITAFFTGVIVAIPTSLLAMKLLNSSLFIDNQELRHINEKISIVINQIDDFREQRLTEKEVTK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.