NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211496_10039824

Scaffold Ga0211496_10039824


Overview

Basic Information
Taxon OID3300020405 Open in IMG/M
Scaffold IDGa0211496_10039824 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1682
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_062
CoordinatesLat. (o)-22.3407Long. (o)40.3444Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F002192Metagenome / Metatranscriptome585Y

Sequences

Protein IDFamilyRBSSequence
Ga0211496_100398241F000613N/AMPLVKKRLSVAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTAGSATADTTMDFTVNNAEFSKNASVSALVTGEPFSWNGNYVMNDMVTTGQVRNRPIITFTNGTAATRTIDVAVFIGG
Ga0211496_100398243F002192N/AMHQILLYSTFFIALFALFAGLYASGRVAKIQSGTKDLDWDAVANMTGDLATLKKTIQTLNNRINGMHSPKLQEQELMMQLLQKQGEKQNGKMIGG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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