NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211496_10065839

Scaffold Ga0211496_10065839


Overview

Basic Information
Taxon OID3300020405 Open in IMG/M
Scaffold IDGa0211496_10065839 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1306
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_062
CoordinatesLat. (o)-22.3407Long. (o)40.3444Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004493Metagenome436Y
F029594Metagenome188Y
F053978Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0211496_100658392F053978AGGAMQINEQTKQLIREIVVELFKEVASKQTFGVSDDVLMLDEHLHDWVGRKIDKYKVKVYGATLEERY
Ga0211496_100658393F029594GAGGMLPDEMEAEKNRKIIVAQADEIDILKRNVRDLQENLATCHKRIKELIDANQ
Ga0211496_100658394F004493AGGAGVETKFTKNKGLGFTDEQWGQLIDANGLLIMWFIEWNNKDWHGTPDMSIQDFFTKKYNQSAGCNPWPIKGAVSLDGKFVSTHQDDEDLEPYFMIDTDDGVGYIYPYAFVALPTKAGGHTIVRMD
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