Basic Information | |
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Taxon OID | 3300020406 Open in IMG/M |
Scaffold ID | Ga0211668_10006802 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6163 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_099 | |||||||
Coordinates | Lat. (o) | -21.1556 | Long. (o) | -104.8217 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001479 | Metagenome / Metatranscriptome | 687 | Y |
F002137 | Metagenome / Metatranscriptome | 590 | Y |
F007756 | Metagenome / Metatranscriptome | 345 | Y |
F013094 | Metagenome / Metatranscriptome | 274 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211668_1000680211 | F002137 | GGAGG | MKVSELIETLSKYDRDDNVTFYFLKNDTLTNCQLEDIGFYPDMGVEFTIQDTSEVMEEVD |
Ga0211668_1000680214 | F001479 | AGGAG | MSKEMLFLCDVFDRWLDENNLPHRSADDILYGENACKLTGNQTYWLESFISTWEVIAEHC |
Ga0211668_100068026 | F013094 | AGGAG | MITAFFTGVIVAIPTSLVAMKLLNSSLFIDNSELRDINQKISLIIHELDDYREERLAEKLGINVDDIK |
Ga0211668_100068027 | F007756 | N/A | MKQLTTEKRYYVTTKFEKYGTYTIMARSKEHAIQMWKNGDWNFDDYESDYGEYNEVIDDIEEEVFADTQLTLSGVLV |
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