NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211668_10006802

Scaffold Ga0211668_10006802


Overview

Basic Information
Taxon OID3300020406 Open in IMG/M
Scaffold IDGa0211668_10006802 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6163
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_099
CoordinatesLat. (o)-21.1556Long. (o)-104.8217Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F002137Metagenome / Metatranscriptome590Y
F007756Metagenome / Metatranscriptome345Y
F013094Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0211668_1000680211F002137GGAGGMKVSELIETLSKYDRDDNVTFYFLKNDTLTNCQLEDIGFYPDMGVEFTIQDTSEVMEEVD
Ga0211668_1000680214F001479AGGAGMSKEMLFLCDVFDRWLDENNLPHRSADDILYGENACKLTGNQTYWLESFISTWEVIAEHC
Ga0211668_100068026F013094AGGAGMITAFFTGVIVAIPTSLVAMKLLNSSLFIDNSELRDINQKISLIIHELDDYREERLAEKLGINVDDIK
Ga0211668_100068027F007756N/AMKQLTTEKRYYVTTKFEKYGTYTIMARSKEHAIQMWKNGDWNFDDYESDYGEYNEVIDDIEEEVFADTQLTLSGVLV
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