NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211668_10036385

Scaffold Ga0211668_10036385


Overview

Basic Information
Taxon OID3300020406 Open in IMG/M
Scaffold IDGa0211668_10036385 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2277
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_099
CoordinatesLat. (o)-21.1556Long. (o)-104.8217Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001607Metagenome / Metatranscriptome664Y
F001614Metagenome / Metatranscriptome663Y

Sequences

Protein IDFamilyRBSSequence
Ga0211668_100363853F001614N/AMVNFFGTYGGLICGFGGFLTAIAACLYARARVAQFERATHDLDWQQVSELSLDVAKLKKASQKWQNNMNAQEAVSLKNLKEQALVQGLMQQSGNVKQIRKIEM
Ga0211668_100363855F001607GAGGMPVIANNVSLTAGSSSVNIFDNTNYQFVNEGTEIRVSAAVVGANDGVQGSNVNYRFTINNTEFADDAIVPALVTGEPFTDGAASYRTNSVIATGQSRNRPLLVFRNQTSGTLVVKFFVFISQQA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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