NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211575_10022270

Scaffold Ga0211575_10022270


Overview

Basic Information
Taxon OID3300020407 Open in IMG/M
Scaffold IDGa0211575_10022270 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2737
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.3379Long. (o)-127.7376Alt. (m)Depth (m)650
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013775Metagenome268Y
F015023Metagenome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0211575_100222705F013775AGGAMVEKRQYETIKEFAKDYRTEIGPMLKSKGFTLTISTSKGSYWNDGRMNFQIKKIPSNFYVWTHEYSKYNKTEKSQKLLNTIRDRVRNLLLSTDLDIDLNFDYHKDVRYKPIPEGWDTNEV
Ga0211575_100222708F015023N/AMRDNTMNTTFKHIDLNDSVNDFMNHLNNNMDKPDGYSYDLVTRGSKYFKVVMNTRGSRSVYCFINKRNGEILKSAGWSAPAKGSRGSVLVPDSYTNSDWSGGWLYKIFGNCYNGSGNTIG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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