NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211472_10009685

Scaffold Ga0211472_10009685


Overview

Basic Information
Taxon OID3300020409 Open in IMG/M
Scaffold IDGa0211472_10009685 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3755
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_031
CoordinatesLat. (o)34.835Long. (o)34.8033Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005720Metagenome / Metatranscriptome392Y
F049044Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0211472_100096853F049044AGGAGGMAYDSSKVAGGKGNFSLNQNFEVEGVDVTLLTVDFIVDMSAETGDLTTGSTTAGLQMVRHAFEHQGLRILAEGPLVDSDTQKTYMVRTDQLDSLSGTTTVAALQAYIRTLDQSSASFPGIAADLTGATVTETKIGILTANAVS
Ga0211472_100096854F005720AGGAGMPATPNNSGNMSRRQSFVGKGLTAIEMIFDVDMATTATTPEAKDSAFDTCSKIIEEHGTILAKSYALACKATERDAADGASITEDELIDTYQFLVEGTPGQFNDADSAGDINLDPNQADSSDPGVIAAAEADIETDILARISENDSAGGVHVTVRYLPADGVTSDGAEAVYGLSNARVNS
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