NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211472_10176931

Scaffold Ga0211472_10176931


Overview

Basic Information
Taxon OID3300020409 Open in IMG/M
Scaffold IDGa0211472_10176931 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)855
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_031
CoordinatesLat. (o)34.835Long. (o)34.8033Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001504Metagenome / Metatranscriptome681Y
F007756Metagenome / Metatranscriptome345Y

Sequences

Protein IDFamilyRBSSequence
Ga0211472_101769311F001504AGCAGGMTCDREHYYAVQTFLEDDELHKIWNIIEIAMNREGYDVENAELSMRLYDSELEENIEHDM
Ga0211472_101769312F007756N/AMTKLNTLKRFYVNVKFEKYGTYTIEARSKEHALEIYKDGDYGWSDYSEDFGEFNEVVEDVEEEIFADTQLSLAGVF

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