NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211699_10000457

Scaffold Ga0211699_10000457


Overview

Basic Information
Taxon OID3300020410 Open in IMG/M
Scaffold IDGa0211699_10000457 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25158
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (4.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_076
CoordinatesLat. (o)-21.0675Long. (o)-35.3923Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041491Metagenome160Y
F044200Metagenome155Y
F059454Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211699_1000045724F041491N/AMETNTISFNVSKTINIGNFEAIKINYGQSITVDPTRPIEEQRQELIQECYATVKKETALWTLKHVQHVDSKKNTTIYKSKIK
Ga0211699_1000045726F059454N/ALKSYLLKKLIAGYKLHPKHSGFDLVALPYKYTNEKILVRYSDKKMIIDQDTPLLGKQTFPDKFGRDKTYTLYYYQWQPIKNQIKLEL
Ga0211699_1000045738F044200N/AMALPFNLNTTTTGRAKGEKIEYIEPGAHECKITGLTTSENLENYNGSPFIQYAVTSNGKVGRCRFWVVKESDKTSTREWKTKQIKDFLVNAGVRDFSDDSKAMNDAIGKSLMCTFISEEYIGVNKENEEPVIRTATKYRWSAKVGGKCTYNNDMNKTLTNEEMADFTSKHATWGRQNAIVQDAANDEDMPF
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